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Do you mean thesis in the sense of original research as required by Master’s degree programs or thesis as in the proposition behind a paper or argument?
In either case the best thesis would be whatever area within the subject that you have knowledge and/or interest in.
Since my interest has always been operating systems in my biased outlook I think this is the best area. Other possibilities would be computability, computer languages, natural language processing, cryptography, algorithms, data structures, data compression, pattern recognition, artificial intelligence, distributed processing, simulation, computer graphics, computing law, computing ethics, computer security, networking, computer privacy, databases, digital signal or image processing, computer vision, software engineering, virtualization, human-computer interfaces and probably a few I can’t think of.
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