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I've been getting discharge for 5 weeks now, what do I do?

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Last month, I missed my period and started getting a dark red/brown discharge instead. It's been going on for 5 weeks now, and I told my doctor, who said that it's just an imbalance and it will regulate itself. Still, I feel really angry that every time I pee, blood and brown stuff comes out. If anyone has ever dealt with this, how long does it usually last? And should I be concerned, despite my doctor's reassurance that it's "normal"?